Docking applications are software tools that allow users to visualize and analyze the interaction between molecules, such as proteins and ligands. These applications help researchers predict how small molecules can bind to specific target sites on larger biomolecules, which is crucial in drug discovery and development. Typically, docking applications use algorithms to simulate the binding process, providing insights into the strength and specificity of the interactions. Popular docking software includes AutoDock, Dock, and MOE, each offering unique features and capabilities to assist scientists in their research efforts.